Career Profile
I am a programmer and computer scientist interested in web technology, functional programming, and reproducible data analysis. I did my Ph.D. (submitted) in Pål Sætroms bioinformatics group at the Norwegian University of Science and Technology.
Experience
Scala developer.
Wrote Snakemake-pipelines to extract and analyze GWAS-data for the HUNT biobank.
Wrote a pipeline for Mina Therapeutics that ran a proprietary machine-learning algorithm for predicting effective siRNA against every gene in the human genome.
Projects
pyranges
- An efficient Python-implementation of the GenomicRanges data-structure.
pyrle
- An efficient and user-friendly implementation of Run Length Encodings in Python. Inspired by the R S4Vectors object.
ncls
- An implementation of the Nested Containment List (NCList) compatible with the Python Science Stack.
epic2
- An ultraperformant implementation of the popular SICER algorithm for finding diffusely enriched domains in ChIP-Seq data.
Publications
For all publications, please see my Google Scholar Profile.
Bioinformatics